+#ifndef BlastAlignment_H
+#define BlastAlignment_H
+
+
/*
* blastalign.hpp
*
*/
#include "mothur.h"
-#include "globaldata.hpp"
+
class BlastAlignment : public Alignment {
BlastAlignment(float, float, float, float);
~BlastAlignment();
void align(string, string);
+ void setMatrix(int){};
+
private:
string candidateFileName;
float mismatch;
float gapOpen;
float gapExtend;
- GlobalData* globaldata;
};
+#endif
+
+
+