string candidateName, templateName;
- while(d=blastFile.get() != '='){}
+ while((d=blastFile.get()) != '='){}
blastFile >> candidateName; // Get the candidate sequence name from flatfile
- while(d=blastFile.get() != '('){}
+ while((d=blastFile.get()) != '('){}
blastFile >> candidateLength; // Get the candidate sequence length from flatfile
- while(d=blastFile.get()){
+ while((d=blastFile.get())){
if(d == '>'){
blastFile >> templateName; // Get the template sequence name from flatfile
break;
}
}
- while(d=blastFile.get() != '='){}
+ while((d=blastFile.get()) != '='){}
blastFile >> templateLength; // Get the template sequence length from flatfile
- while(d=blastFile.get() != 'Q'){} // Suck up everything else until we get to the start of the alignment
+ while((d=blastFile.get()) != 'Q'){} // Suck up everything else until we get to the start of the alignment
int queryStart, sbjctStart, queryEnd, sbjctEnd;
string queryLabel, sbjctLabel, query, sbjct;
while(queryLabel == "Query:"){
blastFile >> queryStart >> query >> queryEnd;
- while(d=blastFile.get() != 'S'){};
+ while((d=blastFile.get()) != 'S'){};
blastFile >> sbjctLabel >> sbjctStart >> sbjct >> sbjctEnd;