]> git.donarmstrong.com Git - mothur.git/blobdiff - binsequencecommand.h
final fixes for 1.7
[mothur.git] / binsequencecommand.h
index aceba65da17315de31515750a62fc53f4b7b9a48..a183151f3580ab5232a1108c25a58c22a0c540e6 100644 (file)
@@ -36,18 +36,14 @@ private:
        InputData* input;
        FastaMap* fasta;
        GroupMap* groupMap;
-       OptionParser* parser;
-       map<string, string> parameters;
-       map<string, string>::iterator it;
        bool abort, allLines;
-       set<int> lines; //hold lines to be used
        set<string> labels; //holds labels to be used
-       string filename, fastafile, namesfile, groupfile, line, label;
+       string filename, fastafile, namesfile, groupfile, label;
        ofstream out;
        ifstream in, inNames;
        
        void readNamesFile();
-       int process(ListVector*, int);
+       int process(ListVector*);
 };
 
 #endif