InputData* input;
FastaMap* fasta;
GroupMap* groupMap;
- OptionParser* parser;
- map<string, string> parameters;
- map<string, string>::iterator it;
bool abort, allLines;
set<int> lines; //hold lines to be used
set<string> labels; //holds labels to be used
ifstream in, inNames;
void readNamesFile();
- int process(ListVector*, int);
+ int process(ListVector*);
};
#endif