working on testing

[mothur.git] / binsequencecommand.h

diff --git a/binsequencecommand.h b/binsequencecommand.h
index 8ea88cbfcff767eec8461df493cea50217675404..6ea7305265a6725a6a6290f6de028b307c5e8a0b 100644 (file)
--- a/binsequencecommand.h
+++ b/binsequencecommand.h
@@ -37,11 +37,11 @@ private:
        FastaMap* fasta;
        GroupMap* groupMap;
        bool abort, allLines;
-       set<int> lines; //hold lines to be used
        set<string> labels; //holds labels to be used
-       string filename, fastafile, namesfile, groupfile, line, label;
+       string filename, fastafile, namesfile, groupfile, label, outputDir;
        ofstream out;
        ifstream in, inNames;
+       vector<string> outputNames;
        
        void readNamesFile();
        int process(ListVector*);