FastaMap* fasta;
GroupMap* groupMap;
bool abort, allLines;
- set<int> lines; //hold lines to be used
set<string> labels; //holds labels to be used
- string filename, fastafile, namesfile, groupfile, line, label;
+ string filename, fastafile, namesfile, groupfile, label, outputDir;
ofstream out;
ifstream in, inNames;
+ vector<string> outputNames;
void readNamesFile();
- int process(ListVector*, int);
+ int process(ListVector*);
};
#endif