changes to filter.seqs

[mothur.git] / bellerophon.h

diff --git a/bellerophon.h b/bellerophon.h
index 85c555043d207878eed1ccb1466e424cd064629e..3d05617d50ad0a9dccb05da2d21bc872e8ca842f 100644 (file)
--- a/bellerophon.h
+++ b/bellerophon.h
@@ -25,15 +25,11 @@ typedef map<int, float> SeqMap;  //maps sequence to all distance for that seqeun
 class Bellerophon : public Chimera {
        
        public:
-               Bellerophon(string);    
+               Bellerophon(string, string);    
                ~Bellerophon() {};
                
                int getChimeras();
-               void print(ostream&);
-               
-               void setCons(string){};
-               void setQuantiles(string) {};
-               
+               int print(ostream&, ostream&);
                
        private:
                Dist* distCalculator;
@@ -43,7 +39,7 @@ class Bellerophon : public Chimera {
                string fastafile;
                int iters;
                
-               void generatePreferences(vector<SeqMap>, vector<SeqMap>, int);
+               int generatePreferences(vector<SeqMap>, vector<SeqMap>, int);
                int createSparseMatrix(int, int, SparseMatrix*, vector<Sequence>);
 };