~Bayesian() {};
string getTaxonomy(Sequence*);
- //map<string, int> getConfidenceScores() { return taxConfidenceScore; }
private:
- //map<string, vector<double> > taxonomyProbability; //probability of a word being in a given taxonomy.
- //taxonomyProbability[bacteria;][0] = probabtility that a sequence within bacteria; would contain kmer 0;
- //taxonomyProbability[bacteria;][1] = probabtility that a sequence within bacteria; would contain kmer 1...
-
vector< vector<float> > wordGenusProb; //vector of maps from genus to probability
//wordGenusProb[0][392] = probability that a sequence within genus that's index in the tree is 392 would contain kmer 0;
string bootstrapResults(vector<int>, int, int);
int getMostProbableTaxonomy(vector<int>);
void readProbFile(ifstream&, ifstream&);
- //map<string, int> parseTaxMap(string);
};