Reorganized source tree & build system

[bamtools.git] / bamtools_pileup.h

diff --git a/bamtools_pileup.h b/bamtools_pileup.h
deleted file mode 100644 (file)
index 3ffb030..0000000
--- a/bamtools_pileup.h
+++ /dev/null
@@ -1,44 +0,0 @@
-// ***************************************************************************
-// bamtools_pileup.h (c) 2010 Derek Barnett, Erik Garrison
-// Marth Lab, Department of Biology, Boston College
-// All rights reserved.
-// ---------------------------------------------------------------------------
-// Last modified: 13 July 2010
-// ---------------------------------------------------------------------------
-// Provides pileup conversion functionality.  
-// 
-// The 'assembly' aspect of pileup makes this more complicated than the 
-// simpler one-to-one conversion methods for other formats.
-// ***************************************************************************
-
-#ifndef BAMTOOLS_PILEUP_H
-#define BAMTOOLS_PILEUP_H
-
-#include <iostream>
-#include <string>
-
-namespace BamTools {
-
-class BamMultiReader;
-class BamRegion;
-
-class Pileup {
-  
-    public:
-        Pileup(BamMultiReader* reader, std::ostream* outStream);
-        ~Pileup(void);
-        
-    public:
-        bool Run(void);
-        void SetFastaFilename(const std::string& filename);
-        void SetIsPrintingMapQualities(bool ok);  
-        void SetRegion(const BamRegion& region);
-  
-    private:
-        struct PileupPrivate;
-        PileupPrivate* d;
-};
-
-} // namespace BamTools
-
-#endif // BAMTOOLS_PILEUP_H
\ No newline at end of file