added phylip as output file type for commands that output distance matrices. added...

[mothur.git] / averagelinkage.cpp

diff --git a/averagelinkage.cpp b/averagelinkage.cpp
index 7522d2a3083f9247744f93a5bc147480f0304a72..c430c883f66d6006cc9bf01a2a964dd62957688f 100644 (file)
--- a/averagelinkage.cpp
+++ b/averagelinkage.cpp
@@ -1,7 +1,7 @@
 #ifndef AVERAGE_H
 #define AVERAGE_H
 
-
+//test
 #include "mothur.h"
 #include "cluster.hpp"
 #include "rabundvector.hpp"
@@ -11,8 +11,8 @@
 
 /***********************************************************************/
 
-AverageLinkage::AverageLinkage(RAbundVector* rav, ListVector* lv, SparseMatrix* dm, float c) :
-       Cluster(rav, lv, dm, c)
+AverageLinkage::AverageLinkage(RAbundVector* rav, ListVector* lv, SparseMatrix* dm, float c, string s) :
+       Cluster(rav, lv, dm, c, s)
 {
        saveRow = -1;
        saveCol = -1;
@@ -43,7 +43,7 @@ bool AverageLinkage::updateDistance(MatData& colCell, MatData& rowCell) {
                return(true);
        }
        catch(exception& e) {
-               errorOut(e, "AverageLinkage", "updateDistance");
+               m->errorOut(e, "AverageLinkage", "updateDistance");
                exit(1);
        }
 }