if (phylipFileName == "not open") { phylipFileName = ""; abort = true; }
else if (phylipFileName == "not found") {
phylipFileName = "";
-
- //check currentFiles for a phylip file
- //if (currentFiles->getPhylipFile() != "") { phylipFileName = currentFiles->getPhylipFile(); m->mothurOut("Using " + phylipFileName + " as phylip file."); m->mothurOutEndLine();
- //}else { m->mothurOut("You must provide an phylip file."); m->mothurOutEndLine(); abort = true; }
}
//check for required parameters
if (designFileName == "not open") { abort = true; }
else if (designFileName == "not found") {
designFileName = "";
-
- //check currentFiles for a design file
- //if (currentFiles->getDesignFile() != "") { designFileName = currentFiles->getDesignFile(); m->mothurOut("Using " + designFileName + " as design file."); m->mothurOutEndLine();
- //}else { m->mothurOut("You must provide an design file."); m->mothurOutEndLine(); abort = true; }
-
}
string temp = validParameter.validFile(parameters, "iters", false);