added name option to trim.seqs

[mothur.git] / anosimcommand.cpp

diff --git a/anosimcommand.cpp b/anosimcommand.cpp
index 623b4333948a8996ab5122389a67bac2cb21bc6f..6f9e53839200ce251b0f607f0b776e075a4dffd4 100644 (file)
--- a/anosimcommand.cpp
+++ b/anosimcommand.cpp
@@ -41,7 +41,7 @@ string AnosimCommand::getHelpString(){
                helpString += "The design file looks like the group file.  It is a 2 column tab delimited file, where the first column is the sample name and the second column is the group the sample belongs to.\n";
                helpString += "The iters parameter allows you to set number of randomization for the P value.  The default is 1000. \n";
                helpString += "The anosim command should be in the following format: anosim(phylip=file.dist, design=file.design).\n";
-               helpString += "Note: No spaces between parameter labels (i.e. iters), '=' and parameters (i.e. 1000).\n\n";
+               helpString += "Note: No spaces between parameter labels (i.e. iters), '=' and parameters (i.e. 1000).\n";
                return helpString;
        }
        catch(exception& e) {
@@ -71,6 +71,7 @@ AnosimCommand::AnosimCommand(string option) {
                
                //allow user to run help
                if(option == "help") { help(); abort = true; calledHelp = true; }
+               else if(option == "citation") { citation(); abort = true; calledHelp = true;}
                
                else {
                        vector<string> myArray = setParameters();