removing chime source files from mother project.

[mothur.git] / alnheuristics.h

diff --git a/alnheuristics.h b/alnheuristics.h
deleted file mode 100644 (file)
index 9a8d283..0000000
--- a/alnheuristics.h
+++ /dev/null
@@ -1,29 +0,0 @@
-#ifndef alnheuristics_h\r
-#define alnheuristics_h\r
-\r
-struct AlnParams;\r
-\r
-struct AlnHeuristics\r
-       {\r
-       unsigned BandRadius;\r
-       unsigned HSPFinderWordLength;\r
-       float SeedT;\r
-\r
-       float XDropG;                   //  GappedBlast default\r
-       float XDropU;                   //  UngappedBlast default\r
-       float XDropUG;                  //  UngappedBlast called by GappedBlast\r
-\r
-       unsigned MinGlobalHSPLength;\r
-\r
-       AlnHeuristics();\r
-       void InitFromCmdLine(const AlnParams &AP);\r
-       void InitGlobalFull();\r
-\r
-       bool IsGlobalFull() const\r
-               {\r
-               return MinGlobalHSPLength == 0 && BandRadius == 0;\r
-               }\r
-\r
-       };\r
-\r
-#endif // alnheuristics_h\r