added sequence name to error string in fastq.info. Changed np_shannon to npshannon.

[mothur.git] / alignmentdb.h

diff --git a/alignmentdb.h b/alignmentdb.h
index 339f46ff65f423dc0366064181e690e25420b1f0..900aadc6eb8be36b9c0193f8d255a2fdc8312269 100644 (file)
--- a/alignmentdb.h
+++ b/alignmentdb.h
@@ -20,7 +20,9 @@ class AlignmentDB {
 
 public:
 
-       AlignmentDB(string, string, int, int, int, int, int);  //reads fastafile passed in and stores sequences
+       AlignmentDB(string, string, int, float, float, float, float, int);  //reads fastafile passed in and stores sequences
+       AlignmentDB(string);
+       AlignmentDB(const AlignmentDB& adb);
        ~AlignmentDB();
        
        Sequence findClosestSequence(Sequence*);
@@ -28,12 +30,13 @@ public:
        int getLongestBase()    {  return longest;  }
        
 private:
-       int numSeqs, longest;
-       float searchScore;
+       int numSeqs, longest, threadID;
+       string method;
        
        Database* search;
        vector<Sequence> templateSequences;
        Sequence emptySequence;
+       MothurOut* m;
 };
 
 /**************************************************************************************************/