added sequence name to error string in fastq.info. Changed np_shannon to npshannon.

[mothur.git] / alignment.hpp

diff --git a/alignment.hpp b/alignment.hpp
index 77b650cab75b8f9bbbd4241f851ccf48da556c3f..7a943fd0037430991a7baab418474e78a496d403 100644 (file)
--- a/alignment.hpp
+++ b/alignment.hpp
@@ -36,6 +36,8 @@ public:
        int getTemplateEndPos();
        
        int getPairwiseLength();
+       void resize(int);
+       int getnRows() { return nRows; }
 //     int getLongestTemplateGap();
 
 protected:
@@ -47,6 +49,7 @@ protected:
        int pairwiseLength;
        int nRows, nCols, lA, lB;
        vector<vector<AlignmentCell> > alignment;
+       MothurOut* m;
 };
 
 /**************************************************************************************************/