changed raredisplay to use vectors instead of files

[mothur.git] / alignment.hpp

diff --git a/alignment.hpp b/alignment.hpp
index b3175560af7f16aa7a4e6fe4d8e87a2a081ae7cf..77b650cab75b8f9bbbd4241f851ccf48da556c3f 100644 (file)
--- a/alignment.hpp
+++ b/alignment.hpp
@@ -23,16 +23,18 @@ class Alignment {
 public:
        Alignment(int);
        Alignment();
+       virtual ~Alignment();
        virtual void align(string, string) = 0;
        
-       float getAlignmentScore();
+       
+//     float getAlignmentScore();
        string getSeqAAln();
        string getSeqBAln();
        int getCandidateStartPos();
        int getCandidateEndPos();
        int getTemplateStartPos();
        int getTemplateEndPos();
-
+       
        int getPairwiseLength();
 //     int getLongestTemplateGap();