#ifndef ALIGNCOMMAND_H
#define ALIGNCOMMAND_H
-
/*
* aligncommand.h
* Mothur
*
*/
-#include "mothur.h"
#include "command.hpp"
#include "database.hpp"
#include "alignment.hpp"
int driver(linePair*, string, string, string, string);
int createProcesses(string, string, string, string);
- void appendAlignFiles(string, string);
void appendReportFiles(string, string);
#ifdef USE_MPI