bug fixes

[mothur.git] / aligncommand.h

diff --git a/aligncommand.h b/aligncommand.h
index fb47874f8e1ff619a015b66b1f60952aafd61eb0..1167c938708bcce7bb54755229bfceef00379822 100644 (file)
--- a/aligncommand.h
+++ b/aligncommand.h
@@ -27,8 +27,8 @@ public:
 private:
        struct linePair {
                unsigned long int start;
-               int numSeqs;
-               linePair(unsigned long int i, int j) : start(i), numSeqs(j) {}
+               unsigned long int end;
+               linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
        };
        vector<int> processIDS;   //processid
        vector<linePair*> lines;