]> git.donarmstrong.com Git - mothur.git/blobdiff - Mothur.xcodeproj/project.pbxproj
added sparcc command. fixed bug in remove.groups that removed all groups if you...
[mothur.git] / Mothur.xcodeproj / project.pbxproj
index c66d96788102f0e4a9500af0cfe9d86725070fa0..f670803d39b300ddc854194a429f76c406800ee3 100644 (file)
@@ -44,6 +44,8 @@
                A74D36B8137DAFAA00332B0C /* chimerauchimecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D36B7137DAFAA00332B0C /* chimerauchimecommand.cpp */; };
                A74D59A4159A1E2000043046 /* counttable.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D59A3159A1E2000043046 /* counttable.cpp */; };
                A754149714840CF7005850D1 /* summaryqualcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A754149614840CF7005850D1 /* summaryqualcommand.cpp */; };
+               A7548FAD17142EBC00B1F05A /* getmetacommunitycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */; };
+               A7548FB0171440ED00B1F05A /* qFinderDMM.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */; };
                A75790591301749D00A30DAB /* homovacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A75790581301749D00A30DAB /* homovacommand.cpp */; };
                A76CDD821510F143004C8458 /* prcseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A76CDD811510F143004C8458 /* prcseqscommand.cpp */; };
                A7730EFF13967241007433A3 /* countseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7730EFE13967241007433A3 /* countseqscommand.cpp */; };
@@ -52,6 +54,9 @@
                A77410F614697C300098E6AC /* seqnoise.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77410F414697C300098E6AC /* seqnoise.cpp */; };
                A778FE6B134CA6CA00C0BA33 /* getcommandinfocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A778FE6A134CA6CA00C0BA33 /* getcommandinfocommand.cpp */; };
                A77A221F139001B600B0BE70 /* deuniquetreecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77A221E139001B600B0BE70 /* deuniquetreecommand.cpp */; };
+               A77B7185173D2240002163C2 /* sparcccommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77B7184173D2240002163C2 /* sparcccommand.cpp */; };
+               A77B7188173D4042002163C2 /* randomnumber.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77B7186173D4041002163C2 /* randomnumber.cpp */; };
+               A77B718B173D40E5002163C2 /* calcsparcc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77B7189173D40E4002163C2 /* calcsparcc.cpp */; };
                A77E1938161B201E00DB1A2A /* randomforest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77E1937161B201E00DB1A2A /* randomforest.cpp */; };
                A77E193B161B289600DB1A2A /* rftreenode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77E193A161B289600DB1A2A /* rftreenode.cpp */; };
                A77EBD2F1523709100ED407C /* createdatabasecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77EBD2E1523709100ED407C /* createdatabasecommand.cpp */; };
                A74D59A6159A1E3600043046 /* counttable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = counttable.h; sourceTree = "<group>"; };
                A754149514840CF7005850D1 /* summaryqualcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summaryqualcommand.h; sourceTree = "<group>"; };
                A754149614840CF7005850D1 /* summaryqualcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summaryqualcommand.cpp; sourceTree = "<group>"; };
+               A7548FAB17142EA500B1F05A /* getmetacommunitycommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = getmetacommunitycommand.h; sourceTree = "<group>"; };
+               A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getmetacommunitycommand.cpp; sourceTree = "<group>"; };
+               A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = qFinderDMM.cpp; sourceTree = "<group>"; };
+               A7548FAF171440ED00B1F05A /* qFinderDMM.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = qFinderDMM.h; sourceTree = "<group>"; };
                A75790571301749D00A30DAB /* homovacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = homovacommand.h; sourceTree = "<group>"; };
                A75790581301749D00A30DAB /* homovacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = homovacommand.cpp; sourceTree = "<group>"; };
                A76CDD7F1510F09A004C8458 /* pcrseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = pcrseqscommand.h; sourceTree = "<group>"; };
                A778FE6A134CA6CA00C0BA33 /* getcommandinfocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getcommandinfocommand.cpp; sourceTree = "<group>"; };
                A77A221D139001B600B0BE70 /* deuniquetreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = deuniquetreecommand.h; sourceTree = "<group>"; };
                A77A221E139001B600B0BE70 /* deuniquetreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = deuniquetreecommand.cpp; sourceTree = "<group>"; };
+               A77B7183173D222F002163C2 /* sparcccommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = sparcccommand.h; sourceTree = "<group>"; };
+               A77B7184173D2240002163C2 /* sparcccommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sparcccommand.cpp; sourceTree = "<group>"; };
+               A77B7186173D4041002163C2 /* randomnumber.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = randomnumber.cpp; sourceTree = "<group>"; };
+               A77B7187173D4041002163C2 /* randomnumber.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = randomnumber.h; sourceTree = "<group>"; };
+               A77B7189173D40E4002163C2 /* calcsparcc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = calcsparcc.cpp; sourceTree = "<group>"; };
+               A77B718A173D40E4002163C2 /* calcsparcc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = calcsparcc.h; sourceTree = "<group>"; };
                A77E1937161B201E00DB1A2A /* randomforest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = randomforest.cpp; sourceTree = "<group>"; };
                A77E193A161B289600DB1A2A /* rftreenode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rftreenode.cpp; sourceTree = "<group>"; };
                A77EBD2C1523707F00ED407C /* createdatabasecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = createdatabasecommand.h; sourceTree = "<group>"; };
                                A7A61F1A130035C800E05B6B /* LICENSE */,
                                A70332B512D3A13400761E33 /* makefile */,
                                A7E9B65912D37EC300DA6239 /* averagelinkage.cpp */,
+                               A77B718A173D40E4002163C2 /* calcsparcc.h */,
+                               A77B7189173D40E4002163C2 /* calcsparcc.cpp */,
                                A7E9BA4F12D398D700DA6239 /* clearcut */,
                                A7E9B69812D37EC400DA6239 /* cluster.cpp */,
                                A7E9B69912D37EC400DA6239 /* cluster.hpp */,
                                A7E9B77C12D37EC400DA6239 /* overlap.hpp */,
                                A7E9B79B12D37EC400DA6239 /* progress.cpp */,
                                A7E9B79C12D37EC400DA6239 /* progress.hpp */,
+                               A7548FAF171440ED00B1F05A /* qFinderDMM.h */,
+                               A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */,
+                               A77B7187173D4041002163C2 /* randomnumber.h */,
+                               A77B7186173D4041002163C2 /* randomnumber.cpp */,
                                A7E9B7A512D37EC400DA6239 /* rarecalc.cpp */,
                                A7386C191619C9FB00651424 /* randomforest */,
                                A7E9B7A612D37EC400DA6239 /* rarecalc.h */,
                                A7E9B6F412D37EC400DA6239 /* getgroupscommand.cpp */,
                                A7E9B6F712D37EC400DA6239 /* getlabelcommand.h */,
                                A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */,
+                               A7548FAB17142EA500B1F05A /* getmetacommunitycommand.h */,
+                               A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */,
                                A70056E8156A93E300924A2D /* getotulabelscommand.h */,
                                A70056E5156A93D000924A2D /* getotulabelscommand.cpp */,
                                A7E9B6F912D37EC400DA6239 /* getlineagecommand.h */,
                                A774101314695AF60098E6AC /* shhhseqscommand.cpp */,
                                A7A32DAC14DC43D10001D2E5 /* sortseqscommand.h */,
                                A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */,
+                               A77B7183173D222F002163C2 /* sparcccommand.h */,
+                               A77B7184173D2240002163C2 /* sparcccommand.cpp */,
                                A7E9B84012D37EC400DA6239 /* splitabundcommand.h */,
                                A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */,
                                A7E9B84212D37EC400DA6239 /* splitgroupscommand.h */,
                                A7E9B66512D37EC400DA6239 /* blastdb.hpp */,
                                A74D59A6159A1E3600043046 /* counttable.h */,
                                A74D59A3159A1E2000043046 /* counttable.cpp */,
-                               A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */,
                                A7E9B6BD12D37EC400DA6239 /* database.cpp */,
                                A7E9B6BE12D37EC400DA6239 /* database.hpp */,
                                A7E9B6BF12D37EC400DA6239 /* datavector.hpp */,
                                A7E9B6CE12D37EC400DA6239 /* distancedb.hpp */,
+                               A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */,
                                A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */,
                                A7E9B6DF12D37EC400DA6239 /* fastamap.h */,
                                A7E9B6E812D37EC400DA6239 /* flowdata.h */,
                08FB7793FE84155DC02AAC07 /* Project object */ = {
                        isa = PBXProject;
                        attributes = {
-                               LastUpgradeCheck = 0420;
+                               LastUpgradeCheck = 0460;
                                ORGANIZATIONNAME = "Schloss Lab";
                        };
                        buildConfigurationList = 1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "Mothur" */;
                                A7128B1D16B7002A00723BE4 /* getdistscommand.cpp in Sources */,
                                A7B0231516B8244C006BA09E /* removedistscommand.cpp in Sources */,
                                A799314B16CBD0CD0017E888 /* mergetaxsummarycommand.cpp in Sources */,
+                               A7548FAD17142EBC00B1F05A /* getmetacommunitycommand.cpp in Sources */,
+                               A7548FB0171440ED00B1F05A /* qFinderDMM.cpp in Sources */,
+                               A77B7185173D2240002163C2 /* sparcccommand.cpp in Sources */,
+                               A77B7188173D4042002163C2 /* randomnumber.cpp in Sources */,
+                               A77B718B173D40E5002163C2 /* calcsparcc.cpp in Sources */,
                        );
                        runOnlyForDeploymentPostprocessing = 0;
                };
                                GCC_OPTIMIZATION_LEVEL = 3;
                                GCC_WARN_UNUSED_VALUE = YES;
                                PRODUCT_NAME = mothur;
+                               SDKROOT = macosx;
                                SKIP_INSTALL = NO;
                        };
                        name = Release;
                                GCC_ENABLE_SSE42_EXTENSIONS = NO;
                                GCC_OPTIMIZATION_LEVEL = 3;
                                GCC_PREPROCESSOR_DEFINITIONS = (
-                                       "MOTHUR_FILES=\"\\\"../release\\\"\"",
-                                       "VERSION=\"\\\"1.28.0\\\"\"",
-                                       "RELEASE_DATE=\"\\\"11/2/2012\\\"\"",
+                                       "MOTHUR_FILES=\"\\\"../../release\\\"\"",
+                                       "VERSION=\"\\\"1.29.2\\\"\"",
+                                       "RELEASE_DATE=\"\\\"2/12/2013\\\"\"",
                                );
                                "GCC_VERSION[arch=*]" = "";
                                GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
                                        "-lncurses",
                                        "-lreadline",
                                );
-                               SDKROOT = macosx10.8;
+                               SDKROOT = macosx;
                                SKIP_INSTALL = NO;
                                USER_HEADER_SEARCH_PATHS = "";
                        };
                                GCC_MODEL_TUNING = "";
                                GCC_OPTIMIZATION_LEVEL = 3;
                                GCC_PREPROCESSOR_DEFINITIONS = (
-                                       "VERSION=\"\\\"1.29.2\\\"\"",
-                                       "RELEASE_DATE=\"\\\"2/12/2013\\\"\"",
+                                       "VERSION=\"\\\"1.30.0\\\"\"",
+                                       "RELEASE_DATE=\"\\\"4/01/2013\\\"\"",
                                );
                                GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
                                GCC_WARN_ABOUT_RETURN_TYPE = YES;
                                        "-lncurses",
                                        "-lreadline",
                                );
-                               SDKROOT = macosx10.8;
+                               SDKROOT = macosx;
                                SKIP_INSTALL = NO;
                        };
                        name = Release;