added get.groups and remove.groups commands

[mothur.git] / Mothur.xcodeproj / project.pbxproj

diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj
index 18269cf4190351debefa4353c9461f8285006d38..f27f7c36d9ed36eb9faf93a7f84597c1d88939f4 100644 (file)
--- a/Mothur.xcodeproj/project.pbxproj
+++ b/Mothur.xcodeproj/project.pbxproj
@@ -45,6 +45,8 @@
                A72B3A7C118B4D1B004B9F8D /* phylodiversity.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylodiversity.cpp; sourceTree = "<group>"; };
                A72C66A1125B356F0058C2F9 /* pipelinepdscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = pipelinepdscommand.h; sourceTree = "<group>"; };
                A72C66A2125B356F0058C2F9 /* pipelinepdscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = pipelinepdscommand.cpp; sourceTree = "<group>"; };
+               A72E295D127ADCE300905B79 /* clusterclassic.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clusterclassic.h; sourceTree = "<group>"; };
+               A72E295E127ADCE300905B79 /* clusterclassic.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clusterclassic.cpp; sourceTree = "<group>"; };
                A732505E11E49EF100484B90 /* sffinfocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sffinfocommand.h; sourceTree = "<group>"; };
                A732505F11E49EF100484B90 /* sffinfocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sffinfocommand.cpp; sourceTree = "<group>"; };
                A73953DA11987ED100B0B160 /* chopseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chopseqscommand.h; sourceTree = "<group>"; };
@@ -55,7 +57,15 @@
                A747E81D116365E000FB9042 /* chimeraslayercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeraslayercommand.cpp; sourceTree = "<group>"; };
                A74A9C03124B72DB000D5D25 /* clusterfragmentscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clusterfragmentscommand.h; sourceTree = "<group>"; };
                A74A9C04124B72DB000D5D25 /* clusterfragmentscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clusterfragmentscommand.cpp; sourceTree = "<group>"; };
+               A751032A128AC93F00ABB831 /* removegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removegroupscommand.h; sourceTree = "<group>"; };
+               A751032B128AC93F00ABB831 /* removegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removegroupscommand.cpp; sourceTree = "<group>"; };
+               A75103D6128AE34100ABB831 /* getgroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getgroupscommand.h; sourceTree = "<group>"; };
+               A75103D7128AE34100ABB831 /* getgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getgroupscommand.cpp; sourceTree = "<group>"; };
                A7639F8D1175DF35008F5578 /* makefile */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.make; path = makefile; sourceTree = "<group>"; };
+               A7653CB112789EFD009D6C09 /* subsamplecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = subsamplecommand.h; sourceTree = "<group>"; };
+               A7653CB212789EFD009D6C09 /* subsamplecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = subsamplecommand.cpp; sourceTree = "<group>"; };
+               A7653D111278B09C009D6C09 /* clusterdoturcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clusterdoturcommand.h; sourceTree = "<group>"; };
+               A7653D121278B09C009D6C09 /* clusterdoturcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clusterdoturcommand.cpp; sourceTree = "<group>"; };
                A76714DD126DE45A003F359A /* deuniqueseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = deuniqueseqscommand.h; sourceTree = "<group>"; };
                A76714DE126DE45A003F359A /* deuniqueseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = deuniqueseqscommand.cpp; sourceTree = "<group>"; };
                A768D95D1248FEAA008AB1D0 /* mothur */ = {isa = PBXFileReference; lastKnownFileType = "compiled.mach-o.executable"; path = mothur; sourceTree = "<group>"; };
@@ -63,6 +73,8 @@
                A76AAD03117F322B003D8DA1 /* phylosummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylosummary.cpp; sourceTree = "<group>"; };
                A76C4A1011876BAF0009460B /* setlogfilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = setlogfilecommand.h; sourceTree = SOURCE_ROOT; };
                A76C4A1111876BAF0009460B /* setlogfilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = setlogfilecommand.cpp; sourceTree = SOURCE_ROOT; };
+               A77D787B126F387700F351BD /* pairwiseseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = pairwiseseqscommand.h; sourceTree = "<group>"; };
+               A77D787C126F387700F351BD /* pairwiseseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = pairwiseseqscommand.cpp; sourceTree = "<group>"; };
                A780E6CB11E7745D00BB5718 /* endiannessmacros.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = endiannessmacros.h; sourceTree = "<group>"; };
                A78254461164D7790002E2DD /* chimerapintailcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimerapintailcommand.h; sourceTree = "<group>"; };
                A78254471164D7790002E2DD /* chimerapintailcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimerapintailcommand.cpp; sourceTree = "<group>"; };
@@ -522,6 +534,8 @@
                                A7DA1FFF113FECD400BF472F /* blastalign.cpp */,
                                A7DA201F113FECD400BF472F /* cluster.cpp */,
                                A7DA2020113FECD400BF472F /* cluster.hpp */,
+                               A72E295D127ADCE300905B79 /* clusterclassic.h */,
+                               A72E295E127ADCE300905B79 /* clusterclassic.cpp */,
                                A7CB593B11402EF90010EB83 /* calculators */,
                                A7CB594A11402FB40010EB83 /* chimeras */,
                                A7CB594511402F6E0010EB83 /* classifers */,
@@ -760,6 +774,8 @@
                                A7D215C911996C6E00F13F13 /* clearcutcommand.cpp */,
                                A7DA2022113FECD400BF472F /* clustercommand.h */,
                                A7DA2021113FECD400BF472F /* clustercommand.cpp */,
+                               A7653D111278B09C009D6C09 /* clusterdoturcommand.h */,
+                               A7653D121278B09C009D6C09 /* clusterdoturcommand.cpp */,
                                A74A9C03124B72DB000D5D25 /* clusterfragmentscommand.h */,
                                A74A9C04124B72DB000D5D25 /* clusterfragmentscommand.cpp */,
                                A71D924311AEB42400D00CBC /* clustersplitcommand.h */,
@@ -780,6 +796,8 @@
                                A76714DE126DE45A003F359A /* deuniqueseqscommand.cpp */,
                                A7DA2050113FECD400BF472F /* filterseqscommand.h */,
                                A7DA204F113FECD400BF472F /* filterseqscommand.cpp */,
+                               A75103D6128AE34100ABB831 /* getgroupscommand.h */,
+                               A75103D7128AE34100ABB831 /* getgroupscommand.cpp */,
                                A7DA205B113FECD400BF472F /* getgroupcommand.h */,
                                A7DA205A113FECD400BF472F /* getgroupcommand.cpp */,
                                A7DA205D113FECD400BF472F /* getlabelcommand.h */,
@@ -828,6 +846,8 @@
                                A798626E1240D91B005FC847 /* normalizesharedcommand.cpp */,
                                A7DA20B9113FECD400BF472F /* otuhierarchycommand.h */,
                                A7DA20B8113FECD400BF472F /* otuhierarchycommand.cpp */,
+                               A77D787B126F387700F351BD /* pairwiseseqscommand.h */,
+                               A77D787C126F387700F351BD /* pairwiseseqscommand.cpp */,
                                A724C2B61254961E006BB1C7 /* parsefastaqcommand.h */,
                                A724C2B71254961E006BB1C7 /* parsefastaqcommand.cpp */,
                                A7DA20BD113FECD400BF472F /* parselistscommand.h */,
@@ -858,6 +878,8 @@
                                A7DA20EA113FECD400BF472F /* readotucommand.cpp */,
                                A7DA20F1113FECD400BF472F /* readtreecommand.h */,
                                A7DA20F0113FECD400BF472F /* readtreecommand.cpp */,
+                               A751032A128AC93F00ABB831 /* removegroupscommand.h */,
+                               A751032B128AC93F00ABB831 /* removegroupscommand.cpp */,
                                A787A28E124CE1470076EB84 /* removelineagecommand.h */,
                                A787A28F124CE1470076EB84 /* removelineagecommand.cpp */,
                                A7DA20F3113FECD400BF472F /* removeseqscommand.h */,
@@ -886,6 +908,8 @@
                                A71D924411AEB42400D00CBC /* splitabundcommand.cpp */,
                                A7F139481247C3CB0033324C /* splitgroupscommand.h */,
                                A7F139491247C3CB0033324C /* splitgroupscommand.cpp */,
+                               A7653CB112789EFD009D6C09 /* subsamplecommand.h */,
+                               A7653CB212789EFD009D6C09 /* subsamplecommand.cpp */,
                                A7DA2155113FECD400BF472F /* summarycommand.h */,
                                A7DA2154113FECD400BF472F /* summarycommand.cpp */,
                                A7DA2159113FECD400BF472F /* summarysharedcommand.h */,
@@ -1108,7 +1132,14 @@
                        };
                        buildConfigurationList = 1DEB919308733D9F0010E9CD /* Build configuration list for PBXProject "Mothur" */;
                        compatibilityVersion = "Xcode 3.0";
+                       developmentRegion = English;
                        hasScannedForEncodings = 1;
+                       knownRegions = (
+                               English,
+                               Japanese,
+                               French,
+                               German,
+                       );
                        mainGroup = 08FB7794FE84155DC02AAC07 /* mothur */;
                        projectDirPath = "";
                        projectRoot = "";