pat's updates on 7/19/10

[mothur.git] / Mothur.xcodeproj / project.pbxproj

diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj
index 2f5722c6efbb90886e04cbbb52967d09714f3331..a3e57afdee5fb693f9dc9d96b3bf646982aff7d3 100644 (file)
--- a/Mothur.xcodeproj/project.pbxproj
+++ b/Mothur.xcodeproj/project.pbxproj
@@ -7,9 +7,19 @@
        objects = {
 
 /* Begin PBXFileReference section */
+               7E84528511EF4BEB00564975 /* seqerrorcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = seqerrorcommand.h; sourceTree = "<group>"; };
+               7E84528611EF4BEB00564975 /* seqerrorcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = seqerrorcommand.cpp; sourceTree = "<group>"; };
+               7E85BD1C11EB5E9B00FD37C0 /* qualityscores.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = qualityscores.h; sourceTree = "<group>"; };
+               7E85BD1D11EB5E9B00FD37C0 /* qualityscores.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = qualityscores.cpp; sourceTree = "<group>"; };
+               7EA299BA11E384940022D8D3 /* sensspeccommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sensspeccommand.h; sourceTree = "<group>"; };
+               7EA299BB11E384940022D8D3 /* sensspeccommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sensspeccommand.cpp; sourceTree = "<group>"; };
                7EC61A0911BEA6AF00F668D9 /* weightedlinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = weightedlinkage.cpp; sourceTree = "<group>"; };
                A703FE931194645F002C397E /* makegroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makegroupcommand.h; sourceTree = SOURCE_ROOT; };
                A703FE941194645F002C397E /* makegroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makegroupcommand.cpp; sourceTree = SOURCE_ROOT; };
+               A7118EE511CFCAC000CFDE03 /* degapseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = degapseqscommand.h; sourceTree = "<group>"; };
+               A7118EE611CFCAC000CFDE03 /* degapseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = degapseqscommand.cpp; sourceTree = "<group>"; };
+               A7118F0F11CFD5DC00CFDE03 /* getrelabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getrelabundcommand.h; sourceTree = "<group>"; };
+               A7118F1011CFD5DC00CFDE03 /* getrelabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getrelabundcommand.cpp; sourceTree = "<group>"; };
                A71D924211AEB42400D00CBC /* clustersplitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clustersplitcommand.cpp; sourceTree = "<group>"; };
                A71D924311AEB42400D00CBC /* clustersplitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clustersplitcommand.h; sourceTree = "<group>"; };
                A71D924411AEB42400D00CBC /* splitabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = splitabundcommand.cpp; sourceTree = "<group>"; };
@@ -20,6 +30,8 @@
                A72B3A63118B37FD004B9F8D /* phylodiversitycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylodiversitycommand.cpp; sourceTree = "<group>"; };
                A72B3A7B118B4D1B004B9F8D /* phylodiversity.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = phylodiversity.h; sourceTree = "<group>"; };
                A72B3A7C118B4D1B004B9F8D /* phylodiversity.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylodiversity.cpp; sourceTree = "<group>"; };
+               A732505E11E49EF100484B90 /* sffinfocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sffinfocommand.h; sourceTree = "<group>"; };
+               A732505F11E49EF100484B90 /* sffinfocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sffinfocommand.cpp; sourceTree = "<group>"; };
                A73953DA11987ED100B0B160 /* chopseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chopseqscommand.h; sourceTree = "<group>"; };
                A73953DB11987ED100B0B160 /* chopseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chopseqscommand.cpp; sourceTree = "<group>"; };
                A747E79B1163442A00FB9042 /* chimeracheckcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeracheckcommand.h; sourceTree = "<group>"; };
@@ -31,6 +43,7 @@
                A76AAD03117F322B003D8DA1 /* phylosummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylosummary.cpp; sourceTree = "<group>"; };
                A76C4A1011876BAF0009460B /* setlogfilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = setlogfilecommand.h; sourceTree = SOURCE_ROOT; };
                A76C4A1111876BAF0009460B /* setlogfilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = setlogfilecommand.cpp; sourceTree = SOURCE_ROOT; };
+               A780E6CB11E7745D00BB5718 /* endiannessmacros.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = endiannessmacros.h; sourceTree = "<group>"; };
                A78254461164D7790002E2DD /* chimerapintailcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimerapintailcommand.h; sourceTree = "<group>"; };
                A78254471164D7790002E2DD /* chimerapintailcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimerapintailcommand.cpp; sourceTree = "<group>"; };
                A7825502116519F70002E2DD /* chimerabellerophoncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimerabellerophoncommand.h; sourceTree = "<group>"; };
@@ -474,6 +487,7 @@
                                A7DA203C113FECD400BF472F /* display.h */,
                                A7DA2042113FECD400BF472F /* dlibshuff.cpp */,
                                A7DA2043113FECD400BF472F /* dlibshuff.h */,
+                               A780E6CB11E7745D00BB5718 /* endiannessmacros.h */,
                                A7DA2048113FECD400BF472F /* engine.cpp */,
                                A7DA2049113FECD400BF472F /* engine.hpp */,
                                A7DA204C113FECD400BF472F /* fileoutput.cpp */,
@@ -530,6 +544,8 @@
                                A7DA2174113FECD400BF472F /* validparameter.h */,
                                A7DA2175113FECD400BF472F /* venn.cpp */,
                                A7DA2176113FECD400BF472F /* venn.h */,
+                               7E84528511EF4BEB00564975 /* seqerrorcommand.h */,
+                               7E84528611EF4BEB00564975 /* seqerrorcommand.cpp */,
                        );
                        name = mothur;
                        sourceTree = "<group>";
@@ -661,12 +677,12 @@
                                A7D216061199C47F00F13F13 /* catchallcommand.h */,
                                A7D216071199C47F00F13F13 /* catchallcommand.cpp */,
                                A7DA2017113FECD400BF472F /* chimeraseqscommand.cpp */,
-                               A78434881162224F00100BE0 /* chimeraccodecommand.h */,
                                A7DA2018113FECD400BF472F /* chimeraseqscommand.h */,
                                A7825502116519F70002E2DD /* chimerabellerophoncommand.h */,
                                A7825503116519F70002E2DD /* chimerabellerophoncommand.cpp */,
                                A747E79B1163442A00FB9042 /* chimeracheckcommand.h */,
                                A747E79C1163442A00FB9042 /* chimeracheckcommand.cpp */,
+                               A78434881162224F00100BE0 /* chimeraccodecommand.h */,
                                A78434891162224F00100BE0 /* chimeraccodecommand.cpp */,
                                A78254461164D7790002E2DD /* chimerapintailcommand.h */,
                                A78254471164D7790002E2DD /* chimerapintailcommand.cpp */,
@@ -690,6 +706,8 @@
                                A7DA202A113FECD400BF472F /* collectsharedcommand.h */,
                                A7DA2031113FECD400BF472F /* consensuscommand.cpp */,
                                A7DA2032113FECD400BF472F /* consensuscommand.h */,
+                               A7118EE511CFCAC000CFDE03 /* degapseqscommand.h */,
+                               A7118EE611CFCAC000CFDE03 /* degapseqscommand.cpp */,
                                A7DA203A113FECD400BF472F /* deconvolutecommand.cpp */,
                                A7DA203B113FECD400BF472F /* deconvolutecommand.h */,
                                A7DA203E113FECD400BF472F /* distancecommand.cpp */,
@@ -706,6 +724,8 @@
                                A7DA2060113FECD400BF472F /* getoturepcommand.cpp */,
                                A7DA2062113FECD400BF472F /* getrabundcommand.cpp */,
                                A7DA2063113FECD400BF472F /* getrabundcommand.h */,
+                               A7118F0F11CFD5DC00CFDE03 /* getrelabundcommand.h */,
+                               A7118F1011CFD5DC00CFDE03 /* getrelabundcommand.cpp */,
                                A7DA2064113FECD400BF472F /* getsabundcommand.cpp */,
                                A7DA2065113FECD400BF472F /* getsabundcommand.h */,
                                A7DA2067113FECD400BF472F /* getseqscommand.h */,
@@ -770,12 +790,16 @@
                                A7DA20F8113FECD400BF472F /* screenseqscommand.cpp */,
                                A7DA20FB113FECD400BF472F /* secondarystructurecommand.h */,
                                A7DA20FA113FECD400BF472F /* secondarystructurecommand.cpp */,
+                               7EA299BA11E384940022D8D3 /* sensspeccommand.h */,
+                               7EA299BB11E384940022D8D3 /* sensspeccommand.cpp */,
                                A7DA20FD113FECD400BF472F /* seqsummarycommand.h */,
                                A7DA20FC113FECD400BF472F /* seqsummarycommand.cpp */,
                                A7DA2103113FECD400BF472F /* setdircommand.h */,
                                A7DA2102113FECD400BF472F /* setdircommand.cpp */,
                                A76C4A1011876BAF0009460B /* setlogfilecommand.h */,
                                A76C4A1111876BAF0009460B /* setlogfilecommand.cpp */,
+                               A732505E11E49EF100484B90 /* sffinfocommand.h */,
+                               A732505F11E49EF100484B90 /* sffinfocommand.cpp */,
                                A7DA2110113FECD400BF472F /* sharedcommand.h */,
                                A7DA210F113FECD400BF472F /* sharedcommand.cpp */,
                                A71D924511AEB42400D00CBC /* splitabundcommand.h */,
@@ -803,6 +827,8 @@
                A7CB594211402F430010EB83 /* containers */ = {
                        isa = PBXGroup;
                        children = (
+                               7E85BD1C11EB5E9B00FD37C0 /* qualityscores.h */,
+                               7E85BD1D11EB5E9B00FD37C0 /* qualityscores.cpp */,
                                A7DA1FF3113FECD400BF472F /* alignmentcell.hpp */,
                                A7DA1FF2113FECD400BF472F /* alignmentcell.cpp */,
                                A7DA1FF4113FECD400BF472F /* alignmentdb.cpp */,
@@ -960,6 +986,7 @@
                        isa = PBXProject;
                        attributes = {
                                BuildIndependentTargetsInParallel = YES;
+                               ORGANIZATIONNAME = "Schloss Lab";
                        };
                        buildConfigurationList = 1DEB919308733D9F0010E9CD /* Build configuration list for PBXProject "Mothur" */;
                        compatibilityVersion = "Xcode 3.0";