added get.sharedotu command

[mothur.git] / Mothur.xcodeproj / project.pbxproj

diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj
index 75ef0d57dda26943c7a2da0c295369cd501c8ed1..59291a3d80849c433545b63e555c8f0af52084c9 100644 (file)
--- a/Mothur.xcodeproj/project.pbxproj
+++ b/Mothur.xcodeproj/project.pbxproj
@@ -162,8 +162,10 @@
                A70B53AA0F4CD7AD0064797E /* getgroupcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */; };
                A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */; };
                A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */; };
-               A75B887D104C16860083C454 /* alignedsimilarity.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A75B8879104C16860083C454 /* alignedsimilarity.cpp */; };
+               A70DECD91063D8B40057C03C /* secondarystructurecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70DECD81063D8B40057C03C /* secondarystructurecommand.cpp */; };
+               A7283FF81056CAE100D0CC69 /* chimeracheckrdp.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7283FF71056CAE100D0CC69 /* chimeracheckrdp.cpp */; };
                A75B887E104C16860083C454 /* ccode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A75B887B104C16860083C454 /* ccode.cpp */; };
+               A7E4A783106913F900688F62 /* getsharedotucommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E4A782106913F900688F62 /* getsharedotucommand.cpp */; };
                EB1216880F619B83004A865F /* bergerparker.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB1216870F619B83004A865F /* bergerparker.cpp */; };
                EB1216E50F61ACFB004A865F /* bstick.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB1216E40F61ACFB004A865F /* bstick.cpp */; };
                EB1217230F61C9AC004A865F /* sharedkstest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB1217220F61C9AC004A865F /* sharedkstest.cpp */; };
@@ -515,10 +517,14 @@
                A70B53A70F4CD7AD0064797E /* getlabelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlabelcommand.h; sourceTree = SOURCE_ROOT; };
                A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlinecommand.cpp; sourceTree = SOURCE_ROOT; };
                A70B53A90F4CD7AD0064797E /* getlinecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlinecommand.h; sourceTree = SOURCE_ROOT; };
-               A75B8879104C16860083C454 /* alignedsimilarity.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = alignedsimilarity.cpp; sourceTree = SOURCE_ROOT; };
-               A75B887A104C16860083C454 /* alignedsimilarity.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = alignedsimilarity.h; sourceTree = SOURCE_ROOT; };
+               A70DECD71063D8B40057C03C /* secondarystructurecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = secondarystructurecommand.h; sourceTree = "<group>"; };
+               A70DECD81063D8B40057C03C /* secondarystructurecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = secondarystructurecommand.cpp; sourceTree = "<group>"; };
+               A7283FF61056CAE100D0CC69 /* chimeracheckrdp.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeracheckrdp.h; sourceTree = SOURCE_ROOT; };
+               A7283FF71056CAE100D0CC69 /* chimeracheckrdp.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeracheckrdp.cpp; sourceTree = SOURCE_ROOT; };
                A75B887B104C16860083C454 /* ccode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ccode.cpp; sourceTree = SOURCE_ROOT; };
                A75B887C104C16860083C454 /* ccode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ccode.h; sourceTree = SOURCE_ROOT; };
+               A7E4A781106913F900688F62 /* getsharedotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getsharedotucommand.h; sourceTree = "<group>"; };
+               A7E4A782106913F900688F62 /* getsharedotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getsharedotucommand.cpp; sourceTree = "<group>"; };
                C6859E8B029090EE04C91782 /* Mothur.1 */ = {isa = PBXFileReference; lastKnownFileType = text.man; path = Mothur.1; sourceTree = "<group>"; };
                EB1216860F619B83004A865F /* bergerparker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bergerparker.h; sourceTree = SOURCE_ROOT; };
                EB1216870F619B83004A865F /* bergerparker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bergerparker.cpp; sourceTree = SOURCE_ROOT; };
@@ -649,12 +655,12 @@
                        children = (
                                374F2FD51006320200E97C66 /* chimera.h */,
                                372095C1103196D70004D347 /* chimera.cpp */,
-                               A75B887A104C16860083C454 /* alignedsimilarity.h */,
-                               A75B8879104C16860083C454 /* alignedsimilarity.cpp */,
                                374F2FE9100634B600E97C66 /* bellerophon.h */,
                                374F2FEA100634B600E97C66 /* bellerophon.cpp */,
                                A75B887C104C16860083C454 /* ccode.h */,
                                A75B887B104C16860083C454 /* ccode.cpp */,
+                               A7283FF61056CAE100D0CC69 /* chimeracheckrdp.h */,
+                               A7283FF71056CAE100D0CC69 /* chimeracheckrdp.cpp */,
                                372A55531017922B00C5194B /* decalc.h */,
                                372A55541017922B00C5194B /* decalc.cpp */,
                                374F301110063B6F00E97C66 /* pintail.h */,
@@ -832,6 +838,8 @@
                                3749271C0FD58C840031C06B /* getsabundcommand.cpp */,
                                37B73CA41004D89A008C4B41 /* getseqscommand.h */,
                                37B73CA51004D89A008C4B41 /* getseqscommand.cpp */,
+                               A7E4A781106913F900688F62 /* getsharedotucommand.h */,
+                               A7E4A782106913F900688F62 /* getsharedotucommand.cpp */,
                                375873F10F7D64800040F377 /* heatmapcommand.h */,
                                375873F00F7D64800040F377 /* heatmapcommand.cpp */,
                                378598640FDD497000EF9D03 /* heatmapsimcommand.h */,
@@ -866,6 +874,8 @@
                                37B73CBF1004EB38008C4B41 /* removeseqscommand.cpp */,
                                7E09C5120FDA79C5002ECAE5 /* reversecommand.h */,
                                7E09C5130FDA79C5002ECAE5 /* reversecommand.cpp */,
+                               A70DECD71063D8B40057C03C /* secondarystructurecommand.h */,
+                               A70DECD81063D8B40057C03C /* secondarystructurecommand.cpp */,
                                371B30B30FD7EE67000414CA /* screenseqscommand.h */,
                                371B30B20FD7EE67000414CA /* screenseqscommand.cpp */,
                                3799A94F0FD6A58C00E33EDE /* seqsummarycommand.h */,
@@ -1177,8 +1187,10 @@
                                374F301310063B6F00E97C66 /* pintail.cpp in Sources */,
                                372A55551017922B00C5194B /* decalc.cpp in Sources */,
                                372095C2103196D70004D347 /* chimera.cpp in Sources */,
-                               A75B887D104C16860083C454 /* alignedsimilarity.cpp in Sources */,
                                A75B887E104C16860083C454 /* ccode.cpp in Sources */,
+                               A7283FF81056CAE100D0CC69 /* chimeracheckrdp.cpp in Sources */,
+                               A70DECD91063D8B40057C03C /* secondarystructurecommand.cpp in Sources */,
+                               A7E4A783106913F900688F62 /* getsharedotucommand.cpp in Sources */,
                        );
                        runOnlyForDeploymentPostprocessing = 0;
                };