]> git.donarmstrong.com Git - mothur.git/blobdiff - Mothur.xcodeproj/project.pbxproj
added otu.association command. added calcSpearman, calcKendall and calcPearson functi...
[mothur.git] / Mothur.xcodeproj / project.pbxproj
index a756931435626cc568867fc76399c68b64fde994..545f7b3a092c3758bdbe30e11722cbf3202e123f 100644 (file)
@@ -18,6 +18,7 @@
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+               A7FA2AC114A0E881007C09A6 /* dpbfa.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = dpbfa.f; sourceTree = "<group>"; };
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+               A7FA2AC314A0E881007C09A6 /* interv.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = interv.f; sourceTree = "<group>"; };
+               A7FA2AC414A0E881007C09A6 /* sgram.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = sgram.f; sourceTree = "<group>"; };
+               A7FA2AC514A0E881007C09A6 /* sinerp.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = sinerp.f; sourceTree = "<group>"; };
+               A7FA2AC614A0E881007C09A6 /* stxwx.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = stxwx.f; sourceTree = "<group>"; };
+               A7FA2B1514A0EBEA007C09A6 /* sslvrg.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = sslvrg.f; sourceTree = "<group>"; };
+               A7FA2B5A14A0F0C2007C09A6 /* intrv.f */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.fortran; path = intrv.f; sourceTree = "<group>"; };
                A7FC480C12D788F20055BC5C /* linearalgebra.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = linearalgebra.h; sourceTree = "<group>"; };
                A7FC480D12D788F20055BC5C /* linearalgebra.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = linearalgebra.cpp; sourceTree = "<group>"; };
                A7FC486512D795D60055BC5C /* pcacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = pcacommand.h; sourceTree = "<group>"; };
                                A7E9B75C12D37EC400DA6239 /* mothur.h */,
                                A7E9B75D12D37EC400DA6239 /* mothurout.cpp */,
                                A7E9B75E12D37EC400DA6239 /* mothurout.h */,
+                               A774104714696F320098E6AC /* myseqdist.h */,
+                               A774104614696F320098E6AC /* myseqdist.cpp */,
                                A7E9B76112D37EC400DA6239 /* nast.cpp */,
                                A7E9B76212D37EC400DA6239 /* nast.hpp */,
                                A7E9B76312D37EC400DA6239 /* nastreport.cpp */,
                                A7E9B7AD12D37EC400DA6239 /* rarefactioncurvedata.h */,
                                7E6BE10812F710D8007ADDBE /* refchimeratest.h */,
                                7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */,
+                               A77410F514697C300098E6AC /* seqnoise.h */,
+                               A77410F414697C300098E6AC /* seqnoise.cpp */,
                                A7E9BA5312D39A5E00DA6239 /* read */,
                                A7E9B82312D37EC400DA6239 /* sharedutilities.cpp */,
                                A7E9B82412D37EC400DA6239 /* sharedutilities.h */,
                        name = uchime;
                        sourceTree = "<group>";
                };
+               A7D161E7149F7F50000523E8 /* fortran */ = {
+                       isa = PBXGroup;
+                       children = (
+                               A7FA2B5A14A0F0C2007C09A6 /* intrv.f */,
+                               A7FA2B1514A0EBEA007C09A6 /* sslvrg.f */,
+                               A7FA2ABC14A0E881007C09A6 /* bsplvb.f */,
+                               A7FA2ABD14A0E881007C09A6 /* bsplvd.f */,
+                               A7FA2ABE14A0E881007C09A6 /* bvalue.f */,
+                               A7FA2ABF14A0E881007C09A6 /* daxpy.f */,
+                               A7FA2AC014A0E881007C09A6 /* ddot.f */,
+                               A7FA2AC114A0E881007C09A6 /* dpbfa.f */,
+                               A7FA2AC214A0E881007C09A6 /* dpbsl.f */,
+                               A7FA2AC314A0E881007C09A6 /* interv.f */,
+                               A7FA2AC414A0E881007C09A6 /* sgram.f */,
+                               A7FA2AC514A0E881007C09A6 /* sinerp.f */,
+                               A7FA2AC614A0E881007C09A6 /* stxwx.f */,
+                       );
+                       name = fortran;
+                       sourceTree = "<group>";
+               };
                A7E9BA3812D3956100DA6239 /* commands */ = {
                        isa = PBXGroup;
                        children = (
                                A7E9B76B12D37EC400DA6239 /* normalizesharedcommand.cpp */,
                                A713EBEB12DC7C5E000092AC /* nmdscommand.h */,
                                A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */,
+                               A7A3C8C814D041AD00B1BFBE /* otuassociationcommand.h */,
+                               A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */,
                                A7E9B77A12D37EC400DA6239 /* otuhierarchycommand.h */,
                                A7E9B77912D37EC400DA6239 /* otuhierarchycommand.cpp */,
                                A7E9B77E12D37EC400DA6239 /* pairwiseseqscommand.h */,
                                A7E9B7F212D37EC400DA6239 /* sharedcommand.cpp */,
                                A7E9B82812D37EC400DA6239 /* shhhercommand.h */,
                                A7E9B82712D37EC400DA6239 /* shhhercommand.cpp */,
+                               A774101214695AF60098E6AC /* shhhseqscommand.h */,
+                               A774101314695AF60098E6AC /* shhhseqscommand.cpp */,
                                A7E9B84012D37EC400DA6239 /* splitabundcommand.h */,
                                A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */,
                                A7E9B84212D37EC400DA6239 /* splitgroupscommand.h */,
                                A7E9B84F12D37EC400DA6239 /* subsamplecommand.cpp */,
                                A7E9B85812D37EC400DA6239 /* summarycommand.h */,
                                A7E9B85712D37EC400DA6239 /* summarycommand.cpp */,
+                               A754149514840CF7005850D1 /* summaryqualcommand.h */,
+                               A754149614840CF7005850D1 /* summaryqualcommand.cpp */,
                                A7E9B85A12D37EC400DA6239 /* summarysharedcommand.h */,
                                A7E9B85912D37EC400DA6239 /* summarysharedcommand.cpp */,
                                A7FFB556142CA02C004884F2 /* summarytaxcommand.h */,
                A7E9BA5612D39BD800DA6239 /* metastats */ = {
                        isa = PBXGroup;
                        children = (
+                               A7D161E7149F7F50000523E8 /* fortran */,
                                A7E9B6E512D37EC400DA6239 /* fisher2.c */,
                                A7E9B6E612D37EC400DA6239 /* fisher2.h */,
                                A7E9B75512D37EC400DA6239 /* metastats.h */,
                                A79234D613C74BF6002B08E2 /* mothurfisher.cpp */,
                                A73DDC3613C4BF64006AAE38 /* mothurmetastats.h */,
                                A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */,
+                               A74A9A9D148E881E00AB5E3E /* spline.h */,
+                               A74A9A9E148E881E00AB5E3E /* spline.cpp */,
                        );
                        name = metastats;
                        sourceTree = "<group>";
                                8DD76FAF0486AB0100D96B5E /* CopyFiles */,
                        );
                        buildRules = (
+                               A7D162CB149F96CA000523E8 /* PBXBuildRule */,
                        );
                        dependencies = (
                        );
                                A7FFB558142CA02C004884F2 /* summarytaxcommand.cpp in Sources */,
                                A7BF221414587886000AD524 /* myPerseus.cpp in Sources */,
                                A7BF2232145879B2000AD524 /* chimeraperseuscommand.cpp in Sources */,
+                               A774101414695AF60098E6AC /* shhhseqscommand.cpp in Sources */,
+                               A774104814696F320098E6AC /* myseqdist.cpp in Sources */,
+                               A77410F614697C300098E6AC /* seqnoise.cpp in Sources */,
+                               A754149714840CF7005850D1 /* summaryqualcommand.cpp in Sources */,
+                               A74A9A9F148E881E00AB5E3E /* spline.cpp in Sources */,
+                               A7FA2AC714A0E881007C09A6 /* bsplvb.f in Sources */,
+                               A7FA2AC814A0E881007C09A6 /* bsplvd.f in Sources */,
+                               A7FA2AC914A0E881007C09A6 /* bvalue.f in Sources */,
+                               A7FA2ACA14A0E881007C09A6 /* daxpy.f in Sources */,
+                               A7FA2ACB14A0E881007C09A6 /* ddot.f in Sources */,
+                               A7FA2ACC14A0E881007C09A6 /* dpbfa.f in Sources */,
+                               A7FA2ACD14A0E881007C09A6 /* dpbsl.f in Sources */,
+                               A7FA2ACE14A0E881007C09A6 /* interv.f in Sources */,
+                               A7FA2ACF14A0E881007C09A6 /* sgram.f in Sources */,
+                               A7FA2AD014A0E881007C09A6 /* sinerp.f in Sources */,
+                               A7FA2AD114A0E881007C09A6 /* stxwx.f in Sources */,
+                               A7FA2B1614A0EBEA007C09A6 /* sslvrg.f in Sources */,
+                               A7FA2B5B14A0F0C2007C09A6 /* intrv.f in Sources */,
+                               A7A3C8C914D041AD00B1BFBE /* otuassociationcommand.cpp in Sources */,
                        );
                        runOnlyForDeploymentPostprocessing = 0;
                };
                                GCC_OPTIMIZATION_LEVEL = 3;
                                GCC_PREPROCESSOR_DEFINITIONS = (
                                        "MOTHUR_FILES=\"\\\"../release\\\"\"",
-                                       "VERSION=\"\\\"1.22.0\\\"\"",
-                                       "RELEASE_DATE=\"\\\"10/12/2011\\\"\"",
+                                       "VERSION=\"\\\"1.23.0\\\"\"",
+                                       "RELEASE_DATE=\"\\\"1/9/2012\\\"\"",
                                );
+                               "GCC_VERSION[arch=*]" = "";
                                GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
                                GCC_WARN_ABOUT_RETURN_TYPE = YES;
                                GCC_WARN_UNUSED_VARIABLE = YES;
+                               HEADER_SEARCH_PATHS = "";
                                INSTALL_PATH = "";
                                MACH_O_TYPE = mh_execute;
                                ONLY_ACTIVE_ARCH = YES;
                                );
                                PREBINDING = NO;
                                SDKROOT = macosx10.6;
+                               USER_HEADER_SEARCH_PATHS = "";
                        };
                        name = Debug;
                };