- string getlineArray[] = {};
- commandParameters["get.line"] = addParameters(getlineArray, sizeof(getlineArray)/sizeof(string));
-
- string rarefactionsingleArray[] = {"iters","freq","line","label","calc","abund"};
- commandParameters["rarefaction.single"] = addParameters(rarefactionsingleArray, sizeof(rarefactionsingleArray)/sizeof(string));
-
- string rarefactionsharedArray[] = {"iters","jumble","line","label","calc","groups"};
- commandParameters["rarefaction.shared"] = addParameters(rarefactionsharedArray, sizeof(rarefactionsharedArray)/sizeof(string));
-
- string libshuffArray[] = {"iters","groups","step","form","cutoff"};
- commandParameters["libshuff"] = addParameters(libshuffArray, sizeof(libshuffArray)/sizeof(string));
-
- string summarysingleArray[] = {"line","label","calc","abund"};
- commandParameters["summary.single"] = addParameters(summarysingleArray, sizeof(summarysingleArray)/sizeof(string));
-
- string summarysharedArray[] = {"jumble","line","label","calc","groups"};
- commandParameters["summary.shared"] = addParameters(summarysharedArray, sizeof(summarysharedArray)/sizeof(string));
-
- string parsimonyArray[] = {"random","groups","iters"};
- commandParameters["parsimony"] = addParameters(parsimonyArray, sizeof(parsimonyArray)/sizeof(string));
-
- string unifracWeightedArray[] = {"groups","iters"};
- commandParameters["unifrac.weighted"] = addParameters(unifracWeightedArray, sizeof(unifracWeightedArray)/sizeof(string));
-
- string unifracUnweightedArray[] = {"groups","iters"};
- commandParameters["unifrac.unweighted"] = addParameters(unifracUnweightedArray, sizeof(unifracUnweightedArray)/sizeof(string));
-
- string heatmapArray[] = {"groups","line","label","sorted","scaler"};
- commandParameters["heatmap"] = addParameters(heatmapArray, sizeof(heatmapArray)/sizeof(string));
-
- string vennArray[] = {"groups","line","label","calc"};
- commandParameters["venn"] = addParameters(vennArray, sizeof(vennArray)/sizeof(string));
-
- string binseqsArray[] = {"fasta","line","label","name"};
- commandParameters["bin.seqs"] = addParameters(binseqsArray, sizeof(binseqsArray)/sizeof(string));
-
- string getOTURepArray[] = {"fasta","list","line","label","name"};
- commandParameters["get.oturep"] = addParameters(getOTURepArray, sizeof(getOTURepArray)/sizeof(string));