- parameters["phylip"] = "phylip";
- parameters["columnfile"] = "columnfile";
- parameters["listfile"] = "listfile";
- parameters["rabundfile"] = "rabundfile";
- parameters["sabundfile"] = "sabundfile";
- parameters["namefile"] = "namefile";
- parameters["groupfile"] = "groupfile";
- parameters["orderfile"] = "orderfile";
- parameters["fastafile"] = "fastafile";
- parameters["treefile"] = "treefile";
+ parameters["phylip"] = "phylip";
+ parameters["column"] = "column";
+ parameters["list"] = "list";
+ parameters["rabund"] = "rabund";
+ parameters["sabund"] = "sabund";
+ parameters["shared"] = "shared";
+ parameters["name"] = "name";
+ parameters["group"] = "group";
+ parameters["order"] = "order";
+ parameters["fasta"] = "fasta";
+ parameters["tree"] = "tree";