commands["bootstrap.shared"] = "bootstrap.shared";
commands["concensus"] = "concensus";
commands["help"] = "help";
commands["filter.seqs"] = "filter.seqs";
commands["bootstrap.shared"] = "bootstrap.shared";
commands["concensus"] = "concensus";
commands["help"] = "help";
commands["filter.seqs"] = "filter.seqs";