+ commands["parsimony"] = "parsimony";
+ commands["unifrac.weighted"] = "unifrac.weighted";
+ commands["unifrac.unweighted"] = "unifrac.unweighted";
+ commands["libshuff"] = "libshuff";
+ commands["tree.shared"] = "tree.shared";
+ commands["heatmap"] = "heatmap";
+ commands["venn"] = "venn";
+ commands["get.group"] = "get.group";
+ commands["get.label"] = "get.label";
+ commands["get.line"] = "get.line";
+ commands["bootstrap.shared"] = "bootstrap.shared";
+ commands["concensus"] = "concensus";
+ commands["help"] = "help";
+ commands["filter.seqs"] = "filter.seqs";
+ commands["quit"] = "quit";
+