- ~UnifracWeightedCommand() { if (abort == false) { delete weighted; delete util; } }
- vector<string> getRequiredParameters();
- vector<string> getValidParameters();
- vector<string> getRequiredFiles();
- map<string, vector<string> > getOutputFiles() { return outputTypes; }
- int execute();
- void help();
+ ~UnifracWeightedCommand() {}
+
+ vector<string> setParameters();
+ string getCommandName() { return "unifrac.weighted"; }
+ string getCommandCategory() { return "Hypothesis Testing"; }
+
+ string getHelpString();
+ string getOutputPattern(string);
+ string getCitation() { return "Lozupone CA, Hamady M, Kelley ST, Knight R (2007). Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities. Appl Environ Microbiol 73: 1576-85. \nhttp://www.mothur.org/wiki/Unifrac.weighted"; }
+ string getDescription() { return "generic tests that describes whether two or more communities have the same structure"; }
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }