@@ -41,7+42,7 @@ class UnifracUnweightedCommand : public Command {
Unweighted* unweighted;
string sumFile, allGroups;
vector<string> groupComb; // AB. AC, BC...
Unweighted* unweighted;
string sumFile, allGroups;
vector<string> groupComb; // AB. AC, BC...
- int iters, numGroups, numComp, counter, processors;
+ int iters, numGroups, numComp, counter, processors, numUniquesInName;
EstOutput userData; //unweighted score info for user tree
EstOutput randomData; //unweighted score info for random trees
vector< vector<float> > utreeScores; //scores for users trees for each comb.
EstOutput userData; //unweighted score info for user tree
EstOutput randomData; //unweighted score info for random trees
vector< vector<float> > utreeScores; //scores for users trees for each comb.
@@ -50,17+51,18 @@ class UnifracUnweightedCommand : public Command {
vector< map<float, float> > rscoreFreq; //map <unweighted score, number of random trees with that score.> -vector entry for each combination.
vector< map<float, float> > rCumul; //map <unweighted score, cumulative percentage of number of random trees with that score or higher.> -vector entry for each combination.
vector< map<float, float> > rscoreFreq; //map <unweighted score, number of random trees with that score.> -vector entry for each combination.
vector< map<float, float> > rCumul; //map <unweighted score, cumulative percentage of number of random trees with that score or higher.> -vector entry for each combination.