splitAtEquals(temp2, temp); //separates length=242, temp=length, temp2=242
convert(temp, seqLength); //converts string to int
if (name.length() != 0) { if(name.substr(1) != seq.getName()) { m->mothurOut("sequence name mismatch btwn fasta and qual file"); m->mothurOutEndLine(); } }
splitAtEquals(temp2, temp); //separates length=242, temp=length, temp2=242
convert(temp, seqLength); //converts string to int
if (name.length() != 0) { if(name.substr(1) != seq.getName()) { m->mothurOut("sequence name mismatch btwn fasta and qual file"); m->mothurOutEndLine(); } }