-}
-/************************************************************/
-void TreeMap::setIndex(string seq, int index) {
- it = treemap.find(seq);
- if (it != treemap.end()) { //sequence name was in group file
- treemap[seq].vectorIndex = index;
- }else {
- treemap[seq].vectorIndex = index;
- treemap[seq].groupname = "not found";
- }
-}
-/************************************************************/
-int TreeMap::getIndex(string seq) {
-
- it = treemap.find(seq);
- // if it is a valid sequence name then return index
- if (it != treemap.end()) { return treemap[seq].vectorIndex; }
- // if not return error code
- else { return -1; }
-