+//**********************************************************************************************************************
+vector<string> TreeGroupCommand::getValidParameters(){
+ try {
+ string Array[] = {"label","calc","groups", "phylip", "column", "name", "precision","cutoff","outputdir","inputdir"};
+ vector<string> myArray (Array, Array+(sizeof(Array)/sizeof(string)));
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "TreeGroupCommand", "getValidParameters");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+TreeGroupCommand::TreeGroupCommand(){
+ try {
+ abort = true;
+ globaldata = GlobalData::getInstance();
+ //initialize outputTypes
+ vector<string> tempOutNames;
+ outputTypes["tree"] = tempOutNames;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "TreeGroupCommand", "TreeGroupCommand");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+vector<string> TreeGroupCommand::getRequiredParameters(){
+ try {
+ vector<string> myArray;
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "TreeGroupCommand", "getRequiredParameters");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+vector<string> TreeGroupCommand::getRequiredFiles(){
+ try {
+ string Array[] = {"phylip","column","shared","or"};
+ vector<string> myArray (Array, Array+(sizeof(Array)/sizeof(string)));
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "TreeGroupCommand", "getRequiredFiles");
+ exit(1);
+ }
+}