map<string, string> name2seq;
map<string, string>::iterator iter;
map<string, string> name2seq;
map<string, string>::iterator iter;
char groupF[STRLEN], tiF[STRLEN], refFastaF[STRLEN], chromListF[STRLEN];
bool hasMappingFile;
char groupF[STRLEN], tiF[STRLEN], refFastaF[STRLEN], chromListF[STRLEN];
bool hasMappingFile;