-char groupF[STRLEN], tiF[STRLEN], refFastaF[STRLEN];
+char groupF[STRLEN], tiF[STRLEN], refFastaF[STRLEN], chromListF[STRLEN];
string cur_gene_id, name;
sprintf(groupF, "%s.grp", refName);
sprintf(tiF, "%s.ti", refName);
sprintf(refFastaF, "%s.transcripts.fa", refName);
string cur_gene_id, name;
sprintf(groupF, "%s.grp", refName);
sprintf(tiF, "%s.ti", refName);
sprintf(refFastaF, "%s.transcripts.fa", refName);