- string outputFileName, format, outAllFileName, outputDir;
- ofstream outputFileHandle, outAll;
- void process(vector<SharedRAbundVector*>);
+ string format, outputDir;
+ int numGroups, processors;
+ int process(vector<SharedRAbundVector*>, string, string);
+ int driver(vector<SharedRAbundVector*>, int, int, string, string, vector< vector<seqDist> >&);