-void convert_sequence(unsigned char* s, int n)
-{
- int i;
- for (i = 0; i < n; i++) {
- s[i] = (char)AMINO_ACID_VALUE[(int)s[i]];
- }
-}
-
-
-void fastq_match(FILE* fin, FILE* fout,
- SwStripedData* sw_data,
- unsigned char* query, int n,
- SEARCH_OPTIONS* options)