//**********************************************************************************************************************
SplitAbundCommand::SplitAbundCommand(){
try {
//**********************************************************************************************************************
SplitAbundCommand::SplitAbundCommand(){
try {
vector<string> tempOutNames;
outputTypes["list"] = tempOutNames;
outputTypes["name"] = tempOutNames;
vector<string> tempOutNames;
outputTypes["list"] = tempOutNames;
outputTypes["name"] = tempOutNames;
//**********************************************************************************************************************
SplitAbundCommand::SplitAbundCommand(string option) {
try {
//**********************************************************************************************************************
SplitAbundCommand::SplitAbundCommand(string option) {
try {
if (listfile != "") { //you are using a listfile to determine abundance
if (outputDir == "") { outputDir = m->hasPath(listfile); }
if (listfile != "") { //you are using a listfile to determine abundance
if (outputDir == "") { outputDir = m->hasPath(listfile); }