- printf("Total number of resimulation is %d\n", tmp2140);
-}
-
-void writeResFiles(char* outFN) {
- FILE *fo;
- double denom;
-
- //calculate normalized read fraction
- double *nrf = new double[M + 1];
- memset(nrf, 0, sizeof(double) * (M + 1));
- denom = 0.0;
- for (int i = 1; i <= M; i++)
- if (eel[i] > EPSILON) {
- nrf[i] = counts[i];
- denom += nrf[i];
- }
- else {
- if (counts[i] > EPSILON) { printf("Warning: An isoform which EEL is less than %.6g gets sampled!\n", MINEEL); }
- }
- assert(denom > 0.0);
- for (int i = 1; i <= M; i++) nrf[i] /= denom;
-
- //calculate tau values
- double *tau = new double[M + 1];
- memset(tau, 0, sizeof(double) * (M + 1));
- denom = 0.0;
- for (int i = 1; i <= M; i++)
- if (eel[i] > EPSILON) {
- tau[i] = nrf[i] / eel[i];
- denom += tau[i];
- }
- assert(denom > 0.0);
- for (int i = 1; i <= M; i++) tau[i] /= denom;
-
- //isoform level
- sprintf(isoResF, "%s.sim.isoforms.results", outFN);
- fo = fopen(isoResF, "w");
- for (int i = 1; i <= M; i++) {
- const Transcript& transcript = transcripts.getTranscriptAt(i);
- fprintf(fo, "%s\t%.2f\t%.15g\t%.15g", transcript.getTranscriptID().c_str(), counts[i], nrf[i], tau[i]);
-
- if (transcript.getLeft() != "") { fprintf(fo, "\t%s", transcript.getLeft().c_str()); }
- fprintf(fo, "\n");
- }
- fclose(fo);
-
- //gene level
- sprintf(geneResF, "%s.sim.genes.results", outFN);
- fo = fopen(geneResF, "w");
- for (int i = 0; i < m; i++) {
- double sum_c = 0.0, sum_nrf = 0.0, sum_tau = 0.0;
- int b = gi.spAt(i), e = gi.spAt(i + 1);
- for (int j = b; j < e; j++) {
- sum_c += counts[j];
- sum_nrf += nrf[j];
- sum_tau += tau[j];
- }
- const string& gene_id = transcripts.getTranscriptAt(b).getGeneID();
- fprintf(fo, "%s\t%.2f\t%.15g\t%.15g\t", gene_id.c_str(), sum_c, sum_nrf, sum_tau);
- for (int j = b; j < e; j++) {
- fprintf(fo, "%s%c", transcripts.getTranscriptAt(j).getTranscriptID().c_str(), (j < e - 1 ? ',' : '\n'));
- }
- }
- fclose(fo);
-
- delete[] nrf;
- delete[] tau;