+/*
+ * shen.cpp
+ * Mothur
+ *
+ * Created by Thomas Ryabin on 5/18/09.
+ * Copyright 2009 __MyCompanyName__. All rights reserved.
+ *
+ */
+
+#include "shen.h"
+#include <math.h>
+
+
+/***********************************************************************/
+EstOutput Shen::getValues(SAbundVector* rank){
+
+ try {
+ data.resize(1,0);
+
+ double n = (double)rank->getNumSeqs();
+ double f1 = (double)rank->get(1);
+
+ double D_rare = 0; //I didn't know what this was. Simply replace the '0' with the appropriate expression.
+ double C_rare = 1; //I didn't know what this was. Simply replace the '1' with the appropriate expression.
+ double Y_rare = 1; //I didn't know what this was. Simply replace the '1' with the appropriate expression.
+
+ double f0 = D_rare/C_rare + f1/C_rare * Y_rare*Y_rare - D_rare;
+
+ data[0] = f0 * (1 - pow(1 - f1/n/f0, m));
+
+ return data;
+ }
+ catch(exception& e) {
+ cout << "Standard Error: " << e.what() << " has occurred in the Coverage class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+ exit(1);
+ }
+ catch(...) {
+ cout << "An unknown error has occurred in the Coverage class function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+ exit(1);
+ }
+};
+
+
+/***********************************************************************/