/*S1, S2 = number of OTUs observed or estimated in A and B
S1 = 0; S2 = 0; S12 = 0; tempA = 0; tempB = 0;
/*S1, S2 = number of OTUs observed or estimated in A and B
@@ -21,10+21,10 @@ EstOutput SorClass::getValues(SharedRAbundVector* shared1, SharedRAbundVector* s
data.resize(1,0);
data.resize(1,0);
- for (int i = 0; i < shared1->size(); i++) {
+ for (int i = 0; i < shared[0]->getNumBins(); i++) {
//store in temps to avoid multiple repetitive function calls
//store in temps to avoid multiple repetitive function calls
- tempA = shared1->getAbundance(i);
- tempB = shared2->getAbundance(i);
+ tempA = shared[0]->getAbundance(i);
+ tempB = shared[1]->getAbundance(i);
//find number of bins in shared1 and shared2
if (tempA != 0) { S1++; }
//find number of bins in shared1 and shared2
if (tempA != 0) { S1++; }
@@ -34,20+34,16 @@ EstOutput SorClass::getValues(SharedRAbundVector* shared1, SharedRAbundVector* s
if ((tempA != 0) && (tempB != 0)) { S12++; }
}
if ((tempA != 0) && (tempB != 0)) { S12++; }
}
- data[0] = (2 * S12) / (float)(S1 + S2);
+ data[0] = 1.0-(2 * S12) / (float)(S1 + S2);
if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
return data;
}
catch(exception& e) {
if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
return data;
}
catch(exception& e) {
- cout << "Standard Error: " << e.what() << " has occurred in the SorClass class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+ m->errorOut(e, "SorClass", "getValues");
exit(1);
}
exit(1);
}
- catch(...) {
- cout << "An unknown error has occurred in the SorClass class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";