- //then this is illumina data with 4 columns
- if (temp != "") {
- string reverseBarcode = reverseOligo(group); //reverse barcode
- group = temp;
-
- //check for repeat barcodes
- map<string, int>::iterator itBar = rbarcodes.find(reverseBarcode);
- if (itBar != rbarcodes.end()) { m->mothurOut("barcode " + reverseBarcode + " is in your oligos file already."); m->mothurOutEndLine(); }
-
- rbarcodes[reverseBarcode]=indexBarcode;
- }
-