+ SetDirectoryCommand() { abort = true; calledHelp = true; setParameters(); }
+ ~SetDirectoryCommand(){}
+
+ vector<string> setParameters();
+ string getCommandName() { return "set.dir"; }
+ string getCommandCategory() { return "General"; }
+ string getOutputFileNameTag(string, string) { return ""; }
+ string getHelpString();
+ string getCitation() { return "http://www.mothur.org/wiki/Set.dir"; }
+ string getDescription() { return "set input, output and default directories"; }
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }