-#ifndef SETCURRENTCOMMAND_H
-#define SETCURRENTCOMMAND_H
-
-/*
- * setcurrentcommand.h
- * Mothur
- *
- * Created by westcott on 3/16/11.
- * Copyright 2011 Schloss Lab. All rights reserved.
- *
- */
-
-
-#include "command.hpp"
-
-class SetCurrentCommand : public Command {
-
-public:
- SetCurrentCommand(string);
- SetCurrentCommand();
- ~SetCurrentCommand() {}
-
- vector<string> setParameters();
- string getCommandName() { return "set.current"; }
- string getCommandCategory() { return "General"; }
- string getHelpString();
- string getCitation() { return "http://www.mothur.org/wiki/Set.current"; }
- string getDescription() { return "set current files for mothur"; }
-
- int execute();
- void help() { m->mothurOut(getHelpString()); }
-
-private:
-
- vector<string> outputNames;
- bool abort;
-
- string clearTypes;
- vector<string> types;
-
- string accnosfile, phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, designfile, taxonomyfile, biomfile;
- string orderfile, treefile, sharedfile, ordergroupfile, relabundfile, fastafile, qualfile, sfffile, oligosfile, processors, flowfile;
-
-
-};
-
-#endif
-
-