- string queryFileName, referenceFileName, namesFileName, errorFileName, outputDir;
+ int setLines(string, string, string, vector<unsigned long long>&, vector<unsigned long long>&, vector<unsigned long long>&);
+ int driver(string, string, string, string, string, string, linePair, linePair, linePair);
+ int createProcesses(string, string, string, string, string, string);
+
+ string queryFileName, referenceFileName, qualFileName, reportFileName, namesFileName, outputDir;