-struct Compare {
- int AA, AT, AG, AC, TA, TT, TG, TC, GA, GT, GG, GC, CA, CT, CG, CC, NA, NT, NG, NC, Ai, Ti, Gi, Ci, Ni, dA, dT, dG, dC;
- string refName, queryName, sequence;
- double errorRate;
- int weight, matches, mismatches, total;
-
- Compare(){
- AA=0; AT=0; AG=0; AC=0;
- TA=0; TT=0; TG=0; TC=0;
- GA=0; GT=0; GG=0; GC=0;
- CA=0; CT=0; CG=0; CC=0;
- NA=0; NT=0; NG=0; NC=0;
- Ai=0; Ti=0; Gi=0; Ci=0; Ni=0;
- dA=0; dT=0; dG=0; dC=0;
- refName = "";
- queryName = "";
- weight = 1;
- matches = 0;
- mismatches = 0;
- total = 0;
- errorRate = 1.0000;
- sequence = "";
- }
-};