- referenceSeqs.push_back(currentSeq);
-
- if (rdb->save) { rdb->referenceSeqs.push_back(currentSeq); }
+ if (currentSeq.getNumBases() == 0) {
+ m->mothurOut("[WARNING]: " + currentSeq.getName() + " is blank, ignoring.");m->mothurOutEndLine();
+ }else {
+ referenceSeqs.push_back(currentSeq);
+ if (rdb->save) { rdb->referenceSeqs.push_back(currentSeq); }
+ }