- mothurOut("The align.check command reads a fasta file and map file.\n");
- mothurOut("It outputs a file containing the secondary structure matches in the .align.check file.\n");
- mothurOut("The align.check command parameters are fasta and map, both are required.\n");
- mothurOut("The align.check command should be in the following format: align.check(fasta=yourFasta, map=yourMap).\n");
- mothurOut("Example align.check(map=silva.ss.map, fasta=amazon.fasta).\n");
- mothurOut("Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFasta).\n\n");
+ m->mothurOut("The align.check command reads a fasta file and map file.\n");
+ m->mothurOut("It outputs a file containing the secondary structure matches in the .align.check file.\n");
+ m->mothurOut("The align.check command parameters are fasta and map, both are required.\n");
+ m->mothurOut("The align.check command should be in the following format: align.check(fasta=yourFasta, map=yourMap).\n");
+ m->mothurOut("Example align.check(map=silva.ss.map, fasta=amazon.fasta).\n");
+ m->mothurOut("Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFasta).\n\n");