+'sample_name.transcript.bam' is a BAM-formatted file of read
+alignments in transcript coordinates. The MAPQ field of each alignment
+is set to min(100, floor(-10 * log10(1.0 - w) + 0.5)), where w is the
+posterior probability of that alignment being the true mapping of a
+read. In addition, RSEM pads a new tag ZW:f:value, where value is a
+single precision floating number representing the posterior
+probability.
+
+'sample_name.transcript.sorted.bam' and
+'sample_name.transcript.sorted.bam.bai' are the sorted BAM file and
+indices generated by samtools (included in RSEM package).
+
+=item B<sample_name.genome.bam, sample_name.genome.sorted.bam and sample_name.genome.sorted.bam.bai>
+
+Only generated when --no-bam-output is not specified and --output-genome-bam is specified.
+
+'sample_name.genome.bam' is a BAM-formatted file of read alignments in