+# Skills
+## Leadership and Mentoring
++ Lead teams of PhD and MD scientists in multiple scientific and
+ industrial programs
++ Mentored graduate students and Outreachy and Google Summer of Code
+ interns
++ Former chair of Debian's Technical Committee
++ Head developer behind https://bugs.debian.org
+## Bioinformatics, Genomics, and Epigenomics
++ NGS and array-based Genomics and Epigenomics of complex human
+ diseases using RNA-seq, targeted DNA sequencing, RRBS, Illumina
+ bead arrays, and Affymetrix microarrays from sample collection to
+ publication
++ Reproducible, scalable bioinformatics analysis using make,
+ nextflow, and cwl based workflows on cloud- and cluster-based
+ systems on terabyte-scale datasets
++ Alignment, annotation, and variant calling using existing and custom
+ software, including GATK, bwa, STAR, and kallisto
++ Using evolutionary genomics to identify causal human variants
+## Statistics
++ Statistical modeling (regression, inference, prediction, and machine
+ learning in very large (> 1TB) datasets) using R and python.
++ Correcting & experimental design to overcome multiple testing,
+ confounders, and batch effects (both Bayesian and frequentist)
++ Reproducible research
+## Software Development
++ Languages: python, R, perl, C, C++, python, groovy, sh (bash, POSIX,
+ and zsh), make
++ Collaborative Development: git, Jira, gitlab CI/CD, github actions,
+ Aha!, continuous integration & deployment, automated testing
++ Web, Mobile: Shiny, jQuery, JavaScript
++ Databases: Postgresql (PL/SQL), SQLite, Mysql, NoSQL
+## Big Data
++ Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
++ Inter-process communication: MPI, OpenMP
++ Filestorage: Gluster, CEFS, GPFS, Lustre
++ Linux system administration
+## Applications and Daemons
++ Web: apache, ngix, varnish (load balancing/caching), REST, SOAP,
+ Tomcat
++ Build Tools: GNU make, cmake
++ Virtualization: libvirt, KVM, qemu, VMware, docker
++ VCS: git, mercurial, subversion
++ Mail: postfix, exim, sendmail, spamassassin
++ Configuration Infrastructure: puppet, hiera, etckeeper, git
++ Documentation: \LaTeX, confluence, emacs, MarkDown, MediaWiki, ikiwiki, trac
++ Monitoring: munin, nagios, icinga, prometheus
++ Issue Tracking: Debbugs, Request Tracker, Trac, JIRA
++ Office Software: Gnumeric, Libreoffice, \LaTeX, Word, Excel,
+ Powerpoint
+## Networking
++ Hardware, Linux routing and firewall experience, ferm, DHCP,
+ openvpn, bonding, NAT, DNHS, SNMP, IPv4, and IPv6.
+## Operating systems
++ GNU/Linux (Debian, Ubuntu, Red Hat)
++ Windows
++ MacOS
+## Communication
++ Strong written communication skills as evidenced by publication
+ record
++ Strong verbal and presentation skills as evidenced by presentation,
+ leadership, and teaching record
+# Authored Open Source Software
++ *[Debbugs](http://bugs.debian.org)*: Bug tracking software for the Debian GNU/Linux
+ distribution.
++ *[CairoHacks](http://git.donarmstrong.com/r/CairoHacks.git)*: Bookmarks and Raster images for large PDF plots in R.
+* Publications and Presentations
++ 24 peer-reviewed publications cited over 3000 times:
+ https://dla2.us/pubs
++ Publication record in GWAS, transcriptomics, SLE, GBM, epigenetics,
+ comparative evolution of mammals, and lipid membranes
++ H index >= 20
++ Multiple presentations on EWAS of PTSD, genetics of SLE, and Open
+ Source: https://dla2.us/pres
+
+# Funding and Awards
+## Grants
++ 2017 R Consortium: *[Adding Linux Binary Builders to R-Hub](https://www.r-consortium.org/blog/2017/04/03/q1-2017-isc-grants)* Role:
+ Co-PI
++ 2015 Blue Waters Allocation Grant: *Making ancestral trees using Bayesian
+ inference to identify disease-causing genetic variants* Role:
+ Primary Investigator
++ *Tracking placenta and uterine funciton using urinary extracellular vesicles* (R21
+ RFA-HD-16-037) Role: Key Personnel
++ *NIAMS* R01-AR045650-04 *Genetics of Childhood Onset SLE* to Chaim O. Jacob.
+ Role: Key Personnel
+
+## Scholarships and Fellowships
++ 2001--2003: University of California, Riverside Doctoral Fellowship
++ 1997--2001: Regents of the University of California Scholarship.