-
-// minMismatchToTrimera = getTrimera(left, right, leftParentTri, middleParentTri, rightParentTri, breakPointTriA, breakPointTriB, singleLeft, bestLeft, singleRight, bestRight);
-//
-// if(minMismatchToChimera - minMismatchToTrimera <= 3){
-// nMera = 2;
-// chimeraRefSeq = stitchBimera(leftParentBi, rightParentBi, breakPointBi);
-// }
-// else{
-// nMera = 3;
-// chimeraRefSeq = stitchTrimera(leftParentTri, middleParentTri, rightParentTri, breakPointTriA, breakPointTriB);
-// }
-